update Dockerfiles and Makefiles

Makefile

@@ -268,18 +268,22 @@ install: shared
 	test -d $(strip $(INSTALL_LIB_PATH));
 	test -d $(strip $(INSTALL_HEADER_PATH));
 	@printf "Installing libxerus.so to $(strip $(INSTALL_LIB_PATH)) and storing the header files in $(strip $(INSTALL_HEADER_PATH)).\n"
+ifdef INSTALL_PYTHON2_PATH
+	test -d $(strip $(INSTALL_PYTHON2_PATH));
+	@printf "Installing python2/xerus.so to $(strip $(INSTALL_PYTHON2_PATH)).\n"
+endif
+ifdef INSTALL_PYTHON3_PATH
+	test -d $(strip $(INSTALL_PYTHON3_PATH));
+	@printf "Installing python3/xerus.so to $(strip $(INSTALL_PYTHON3_PATH)).\n"
+endif
 	cp include/xerus.h $(INSTALL_HEADER_PATH)
 	cp -r include/xerus $(INSTALL_HEADER_PATH)
 	cp build/libxerus_misc.so $(INSTALL_LIB_PATH)
 	cp build/libxerus.so $(INSTALL_LIB_PATH)
 ifdef INSTALL_PYTHON2_PATH
-	test -d $(strip $(INSTALL_PYTHON2_PATH));
-	@printf "Installing xerus.so to $(strip $(INSTALL_PYTHON2_PATH)).\n"
 	cp build/python2/xerus.so $(INSTALL_PYTHON2_PATH)
 endif
 ifdef INSTALL_PYTHON3_PATH
-	test -d $(strip $(INSTALL_PYTHON3_PATH));
-	@printf "Installing xerus.so to $(strip $(INSTALL_PYTHON3_PATH)).\n"
 	cp build/python3/xerus.so $(INSTALL_PYTHON3_PATH)
 endif
 else

config.mk.default

@@ -140,9 +140,5 @@ BOOST_LIBS = -lboost_filesystem -lboost_system
 # ARPACK_LIBRARIES = -larpack
 # OTHER += -DARPACK_LIBRARIES
 
-# Uncomment or add the appropriate boost python library
-BOOST_PYTHON2 = -lboost_python-py27
-BOOST_PYTHON3 = -lboost_python-py35
-
 # Custom include paths
 # OTHER += -I /path/to/include

docker/base/Dockerfile

-FROM phusion/baseimage:0.9.22
+FROM phusion/baseimage:0.11
 USER root
 WORKDIR "/tmp/"
 
 # Get Ubuntu updates
-RUN apt-get -qq update && \
-    apt-get -y --with-new-pkgs -o Dpkg::Options::="--force-confold" upgrade
+RUN apt-get update && \
+    apt-get upgrade -y -o Dpkg::Options::="--force-confold"
 
 # Set locale environment
 RUN apt-get -y install locales sudo && \
@@ -14,10 +14,6 @@ ENV LC_ALL=C.UTF-8 \
     LANG=C.UTF-8 \
     LANGUAGE=C.UTF-8
 
-# Turn off forwarding of syslog messages to stdout
-# https://github.com/phusion/baseimage-docker/issues/186
-RUN touch /etc/service/syslog-forwarder/down
-
 # Non-Python utilities and libraries
 RUN apt-get -y install \
     cmake \
@@ -32,7 +28,12 @@ RUN apt-get -y install \
     libopenblas-dev \
     libiberty-dev \
     binutils-dev \
-    zlib1g-dev
+    zlib1g-dev \
+    libdpkg-perl
+
+# Check Python versions
+RUN python  -c'from __future__ import print_function; import sys; version = "{0}.{1}".format(*sys.version_info); print("python2-version:", version)'
+RUN python3 -c'import sys; version = "{0}.{1}".format(*sys.version_info); print("python3-version:", version)'
 
 # Install Python2 based environment
 RUN apt-get -y install \

docker/build.sh

 #!/bin/bash
 DIRNAME=$(dirname $0)
-docker build "$@" -t firemarmot/base $DIRNAME/base
-docker build "$@" -t firemarmot/suitesparse $DIRNAME/suitesparse
-docker build "$@" -t firemarmot/xerus $DIRNAME/xerus
+docker build "$@" -t firemarmot/base $DIRNAME/base && \
+docker build "$@" -t firemarmot/suitesparse $DIRNAME/suitesparse && \
+docker build "$@" -t firemarmot/xerus $DIRNAME/xerus && \
 # docker build "$@" -t firemarmot/interactive $DIRNAME/interactive
 docker build "$@" -t firemarmot/interactive_fenics $DIRNAME/interactive_fenics

docker/xerus/Dockerfile

@@ -3,22 +3,26 @@ USER root
 WORKDIR "/tmp/"
 
 # Check Python versions
-RUN python  -c'import sys; version = "{0}.{1}".format(*sys.version_info); print("python2-version:", version); raise SystemExit(version != "2.7")'
+RUN python  -c'from __future__ import print_function; import sys; version = "{0}.{1}".format(*sys.version_info); print("python2-version:", version); raise SystemExit(version != "2.7")'
 RUN python3 -c'import sys; version = "{0}.{1}".format(*sys.version_info); print("python3-version:", version); raise SystemExit(version != "3.6")'
 
 # Install Xerus
 RUN git clone https://git.hemio.de/xerus/xerus.git
 WORKDIR "/tmp/xerus/"
 RUN git checkout pybind11 && \
-	cp ./docker/xerus/config.mk . && \
+	git pull && \
+	git submodule update --init --recursive
+RUN cp ./docker/xerus/config.mk . && \
 	mkdir -p /usr/local/lib && \
 	mkdir -p /usr/local/include && \
 	mkdir -p /usr/local/lib/python2.7/site-packages && \
 	mkdir -p /usr/local/lib/python3.6/site-packages && \
+	make python2 python3 -j $(cat /tmp/NCORES_1)
+RUN ls /usr/local/lib/python3.6/ && \
 	make install -j $(cat /tmp/NCORES_1)
 
 RUN mkdir -p $(python -m site --user-site) && \
 	echo /usr/local/lib/python2.7/site-packages/ >$(python -m site --user-site)/xerus.pth && \
 	mkdir -p $(python3 -m site --user-site) && \
-	echo /usr/local/lib/python3.5/site-packages/ >$(python3 -m site --user-site)/xerus.pth
+	echo /usr/local/lib/python3.6/site-packages/ >$(python3 -m site --user-site)/xerus.pth
 ENV LD_LIBRARY_PATH "/usr/local/lib/:$LD_LIBRARY_PATH"

docker/xerus/config.mk

@@ -15,7 +15,7 @@ LOGGING += -D XERUS_LOG_ABSOLUTE_TIME     # Print absolute times instead of rela
 INSTALL_LIB_PATH = /usr/local/lib         # Path where to install the libxerus.so shared library.
 INSTALL_HEADER_PATH = /usr/local/include  # Path where to install the xerus header files.
 INSTALL_PYTHON2_PATH = /usr/local/lib/python2.7/site-packages
-INSTALL_PYTHON3_PATH = /usr/local/lib/python3.5/site-packages
+INSTALL_PYTHON3_PATH = /usr/local/lib/python3.6/site-packages
 
 BLAS_LIBRARIES = -lopenblas -lgfortran    # Openblas, serial
 LAPACK_LIBRARIES = -llapacke -llapack     # Standard Lapack + Lapacke libraries